spatial atac-rna-seq mouse brain tissue niche organization (Spatial Transcriptomics Inc)
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Spatial Transcriptomics Inc
spatial atac-rna-seq mouse brain tissue niche organization
Spatial Atac Rna Seq Mouse Brain Tissue Niche Organization, supplied by Spatial Transcriptomics Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/spatial+atac-rna-seq+mouse+brain+tissue+niche+organization/spatial+atac+rna+seq+mouse+brain+tissue+niche+organization/pmc11985353__41588_2025_2120_MOESM3_ESM-350-120-137
Average 90 stars, based on 1 article reviews
Spatial Atac Rna Seq Mouse Brain Tissue Niche Organization, supplied by Spatial Transcriptomics Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/spatial+atac-rna-seq+mouse+brain+tissue+niche+organization/spatial+atac+rna+seq+mouse+brain+tissue+niche+organization/pmc11985353__41588_2025_2120_MOESM3_ESM-350-120-137
Average 90 stars, based on 1 article reviews
spatial atac-rna-seq mouse brain tissue niche organization - by Bioz Stars,
2026-09
90/100 stars
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other:Article Title: Quantitative characterization of cell niches in spatially resolved omics data Article Snippet: Overall, besides modifications to and shortening of existing analyses and figures (including removal of Fig. 6), we added 13 new supplementary figures and two new supplementary notes: - Supplementary Fig. 8: Niche and GP inference reproducibility and generalizability - Supplementary Fig. 9: Niche and GP inference neighborhood graph robustness - Supplementary Fig. 10: Niche and GP inference with different prior GP sets - Supplementary Fig. 14: Data simulation - Supplementary Fig. 15: NicheCompass ablation - Supplementary Fig. 16: Additional ablation and benchmarking on spot-level resolution data - Supplementary Fig. 24: Characterization of stromal niches - Supplementary Fig. 25: Tumor niches neighborhood composition - Supplementary Fig. 29: Characterization of infiltrating macrophages in Donor 13 as SPP1+ macrophages - Supplementary Fig. 30: Spatial ATAC-RNA-seq mouse brain tissue niche organization - Supplementary Fig. 36: NicheCompass integrates tissue samples across different spatial transcriptomics technologies - Supplementary Fig. 37: Overlap between characterizing GP genes and differentially expressed genes (DEGs) from non-spatial analysis in the seqFISH mouse organogenesis analysis - Supplementary Fig. 38: seqFISH mouse organogenesis spatial reference mapping - Supplementary Note 5: Ablation experiments and guidance on hyperparameter selection - Supplementary Note 7: Spatial ATAC-RNA-seq mouse brain niche annotation & characterization In the following, reviewers' comments appear in blue, our point-by-point answers appear in green. |